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XB-GRNA-23659747
gRNA Name:
ptf1a gRNA3
Synonyms: ptf1a/p48-T2
Genomic Target: ptf1a
PAM Sequence: AGG
Sequence: 5' GGAGATGCAGCAGCTCAGGC 3'
Synonyms: ptf1a/p48-T2
Genomic Target: ptf1a
PAM Sequence: AGG
Sequence: 5' GGAGATGCAGCAGCTCAGGC 3'
| Genomic Target | tropicalis | laevis.L | |||||
| Identities | 20/20 | 20/20 | |||||
genome
gRNA
|
5' GCCTGAGCTGCTGCATCTCC 3' |||||||||||||||||||| 3' CGGACTCGACGACGTAGAGG 5' |
5' GCCTGAGCTGCTGCATCTCC 3' |||||||||||||||||||| 3' CGGACTCGACGACGTAGAGG 5' |
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| Genomic Alignments |
Position | Identity | Strand | Target | Genomic Target | ||
| laevis 9.2 | chr6L:23329357..23329376 | 20/20 | Sense | target | ptf1a.L | ||
| chr9_10L:41780087..41780106 | 18/20 | Antisense | off-target | LOC108701180 | |||
| chr6L:51855878..51855897 | 16/20 | Antisense | off-target | ulk4.L | |||
| chr9_10S:32814955..32814974 | 16/20 | Antisense | off-target | fdxr.S | |||
| chr1L:205241511..205241530 | 16/20 | Antisense | off-target | pdzd2.L | |||
| chr4L:140976594..140976613 | 16/20 | Antisense | off-target | prickle2.L | |||
| chr1S:44318213..44318232 | 16/20 | Antisense | off-target | LOC108706660 [provisional:fbxw7] | |||
| chr4S:108384848..108384867 | 18/20 | unknown | |||||
| chr6L:17475373..17475392 | 18/20 | unknown | |||||
| chr1S:38600530..38600549 | 17/20 | unknown | |||||
| chr5L:65360159..65360178 | 17/20 | unknown | |||||
| chr7S:57051449..57051468 | 17/20 | unknown | |||||
| chr6S:45180008..45180027 | 16/20 | unknown | |||||
| chr8S:64549065..64549084 | 16/20 | unknown | tropicalis 10.0 | Chr6:26467531..26467550 | 20/20 | Sense | target | ptf1a |
| Chr2:22806657..22806676 | 18/20 | Antisense | off-target | pou1f1 | |||
| Chr8:520551..520570 | 18/20 | Sense | off-target | ccdc120 | |||
| Chr8:75382061..75382080 | 17/20 | Antisense | off-target | abcf1 | |||
| Chr4:148872629..148872648 | 17/20 | Antisense | off-target | arhgef3.2 | |||
| Chr6:53494640..53494659 | 16/20 | Antisense | off-target | ulk4 | |||
| Chr2:62635892..62635911 | 16/20 | Antisense | off-target | ap4b1 | |||
| Chr6:91849397..91849416 | 16/20 | Antisense | off-target | ranbp9 | |||
| Chr6:1479634..1479653 | 19/20 | unknown | |||||
| Chr6:21240005..21240024 | 18/20 | unknown | |||||
| Chr1:156759079..156759098 | 16/20 | unknown | |||||
| Publications | |||||||
| ???morpholino.displaySummary.papersFirst??? |
Targeted gene disruption in Xenopus laevis using CRISPR/Cas9., Cell Biosci 2015 |
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| ???morpholino.displaySummary.papersRecent??? | |||||||
| ???morpholino.displaySummary.papersAll??? | |||||||
