Ploidy and neuron size impact nervous system development and function in Xenopus., Liu X, Wan C, Shah SA, Heald R., Cell Rep. February 10, 2026; 45 (2): 116969. 
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In-cell Proteomics Enables High-Resolution Spatial and Temporal Mapping of Early Xenopus tropicalis Embryos., Sun J, Xu X, Wei S, Yu Y., Mol Cell Proteomics. December 5, 2025; 101481.
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Early female germline development in Xenopus laevis: Stem cells, nurse cells, and germline cysts., Davidian A, Spradling AC., Proc Natl Acad Sci U S A. November 18, 2025; 122 (46): e2522343122.
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Foxi2 and Sox3 are master transcription regulators that control ectoderm germ layer specification in Xenopus., Hendrickson CL, Blitz IL, Hussein A, Paraiso KD, Cho JS, Klymkowsky MW, Kofron MJ, Cho KWY., PLoS Biol. November 4, 2025; 23 (11): e3003476.
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A Cell Type-Specific Role for Tubb6 in Ciliogenesis of Xenopus Epidermal Multiciliated Cells., Xu X, Ross J, Clark F, Wei S, Sun J., Cytoskeleton (Hoboken). October 11, 2025;
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Optimized Analysis of Proteins from Xenopus Oocytes and Embryos by Immunoblotting., Kanzler CR, Sheets MD., J Vis Exp. September 19, 2025; (223):
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The nuclear-cytoplasmic ratio controls the cell-cycle period in compartmentalized frog egg extract., Piñeros L, Frolov N, Ruiz-Reynés D, Van Eynde A, Cavin-Meza G, Heald R, Gelens L., Curr Biol. August 22, 2025; 35 (18): 4426-4441.e6.
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Spindle morphology changes between meiosis and mitosis driven by CK2 regulation of the Ran pathway., Cantwell H, Nguyen H, Kettenbach AN, Heald R., J Cell Biol. July 4, 2025; 224 (8):
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Apical size reduction by macropinocytosis alleviates tissue crowding., Bresteau E, Suva EE, Revell C, Hassan OA, Grata A, Sheridan J, Mitchell J, Arvanitis C, Korobova F, Woolner S, Jensen OE, Mitchell B., Nat Commun. June 23, 2025; 16 (1): 5338.
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Brain implantation of soft bioelectronics via embryonic development., Sheng H, Liu R, Li Q, Lin Z, He Y, Blum TS, Zhao H, Tang X, Wang W, Jin L, Wang Z, Hsiao E, Le Floch P, Shen H, Lee AJ, Jonas-Closs RA, Briggs J, Liu S, Solomon D, Wang X, Whited JL, Lu N, Liu J., Nature. June 11, 2025;
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Disrupted endosomal trafficking of the Vangl-Celsr polarity complex underlies congenital anomalies in Xenopus trachea-esophageal morphogenesis., Edwards NA, Rankin SA, Kashyap A, Warren A, Agricola ZN, Kenny AP, Kofron M, Shen Y, Chung WK, Zorn AM., Dev Cell. May 22, 2025; 60 (18): 2487-2502.e4.
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An epigenetic clock for Xenopus tropicalis., Bennett R, Morselli M, Petrova K, Peshkin L, Pellegrini M., NPJ Aging. May 22, 2025; 11 (1): 38.
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Multiscale and recursive unmixing of spatiotemporal rhythms for live-cell and intravital cardiac microscopy., Ling Z, Liu W, Yoon K, Hou J, Forghani P, Hua X, Yoon H, Bagheri M, Dasi LP, Mandracchia B, Xu C, Nie S, Jia S., Nat Cardiovasc Res. May 7, 2025;
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Spatial regulation of mitochondrial membrane potential by α5β1 integrin engagement in collective cell migration., Pacheco GG, Dzamba BJ, Endo W, Edwards BC, Khan M, Comlekoglu T, Shook DR, Quasey K, Bjerke MA, Hirsh GD, Kashatus DF, DeSimone DW., J Cell Sci. May 1, 2025; 138 (9):
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Shh signaling directs dorsal ventral patterning in the regenerating X. tropicalis spinal cord., Angell Swearer A, Perkowski S, Wills A., Dev Biol. April 22, 2025; 520 191-199.
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Targets of the transcription factor Six1 identify previously unreported candidate deafness genes., Ranganathan R, Sari F, Wang SX, Thiery A, Buzzi AL, Guerra R, Moody SA, Streit A., Development. April 1, 2025; 152 (7):
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Interspecific comparisons of anuran embryonic epidermal landscapes and energetic trade-offs in response to changes in salinity., Whitfield K, Crespi EJ., Dev Dyn. March 17, 2025;
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Autism gene variants disrupt enteric neuron migration and cause gastrointestinal dysmotility., McCluskey KE, Stovell KM, Law K, Kostyanovskaya E, Schmidt JD, Exner CRT, Dea J, Brimble E, State MW, Willsey AJ, Willsey HR., Nat Commun. March 6, 2025; 16 (1): 2238.
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Novel laser model of optic nerve transection provides valuable insights about the dynamics of optic nerve regeneration., Moulin C, Dvoriantchikova G, Bineshfar N, Swingle B, Martinez G, Groso D, Zhang M, Ivanov D, Pelaez D., Sci Rep. November 9, 2024; 14 (1): 27412.
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Dzip1 is dynamically expressed in the vertebrate germline and regulates the development of Xenopus primordial germ cells., Turgeon A, Fu J, Divyanshi, Ma M, Jin Z, Hwang H, Li M, Qiao H, Mei W, Yang J., Dev Biol. October 1, 2024; 514 28-36.
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Molecular basis of urostyle development in frogs: genes and gene regulation underlying an evolutionary novelty., Senevirathne G, Shubin NH., Open Biol. August 28, 2024; 14 (8): 240111.
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5-Formylcytosine is an activating epigenetic mark for RNA Pol III during zygotic reprogramming., Parasyraki E, Mallick M, Hatch V, Vastolo V, Musheev MU, Karaulanov E, Gopanenko A, Moxon S, Méndez-Lago M, Han D, Schomacher L, Mukherjee D, Niehrs C., Cell. August 17, 2024; 187 (21): 6088-6103.e18.
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Leptin signaling promotes blood vessel formation in the Xenopus tail during the embryo-larval transition., Curtis GH, Reeve RE, Crespi EJ., Dev Biol. May 3, 2024; 512 26-34.
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RFX6 regulates human intestinal patterning and function upstream of PDX1., Sanchez JG, Rankin S, Paul E, McCauley HA, Kechele DO, Enriquez JR, Jones NH, Greeley SAW, Letourneau-Frieberg L, Zorn AM, Krishnamurthy M, Wells JM., Development. May 1, 2024; 151 (9):
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ZP2 cleavage blocks polyspermy by modulating the architecture of the egg coat., Nishio S, Emori C, Wiseman B, Fahrenkamp D, Dioguardi E, Zamora-Caballero S, Bokhove M, Han L, Stsiapanava A, Algarra B, Lu Y, Kodani M, Bainbridge RE, Komondor KM, Carlson AE, Landreh M, de Sanctis D, Yasumasu S, Ikawa M, Jovine L., Cell. March 14, 2024; 187 (6): 1440-1459.e24.
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Protocol for tail vein injection in Xenopus tropicalis tadpoles., Patel JH, Angell Swearer A, Kakebeen AD, Loh LR, Wills AE., STAR Protoc. February 15, 2024; 5 (1): 102895.
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R-Spondin 2 governs Xenopus left-right body axis formation by establishing an FGF signaling gradient., Lee H, Camuto CM, Niehrs C., Nat Commun. February 2, 2024; 15 (1): 1003.
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Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs., Bredeson JV, Mudd AB, Medina-Ruiz S, Mitros T, Smith OK, Miller KE, Lyons JB, Batra SS, Park J, Berkoff KC, Plott C, Grimwood J, Schmutz J, Aguirre-Figueroa G, Khokha MK, Lane M, Philipp I, Laslo M, Hanken J, Kerdivel G, Buisine N, Sachs LM, Buchholz DR, Kwon T, Smith-Parker H, Gridi-Papp M, Ryan MJ, Denton RD, Malone JH, Wallingford JB, Straight AF, Heald R, Hockemeyer D, Harland RM, Rokhsar DS., Nat Commun. January 17, 2024; 15 (1): 579.
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Preparation of Xenopus borealis and Xenopus tropicalis Egg Extracts for Comparative Cell Biology and Evolutionary Studies., Kitaoka M, Guilloux G, Heald R, Gibeaux R., Methods Mol Biol. January 1, 2024; 2740 169-185.
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Solubility phase transition of maternal RNAs during vertebrate oocyte-to-embryo transition., Hwang H, Chen S, Ma M, Divyanshi, Fan HC, Borwick E, Böke E, Mei W, Yang J., Dev Cell. December 4, 2023; 58 (23): 2776-2788.e5.
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Functional odor map heterogeneity is based on multifaceted glomerular connectivity in larval Xenopus olfactory bulb., Offner T, Weiss L, Daume D, Berk A, Inderthal TJ, Manzini I, Hassenklöver T., iScience. September 15, 2023; 26 (9): 107518.
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Bidirectional multiciliated cell extrusion is controlled by Notch-driven basal extrusion and Piezo1-driven apical extrusion., Ventrella R, Kim SK, Sheridan J, Grata A, Bresteau E, Hassan OA, Suva EE, Walentek P, Mitchell BJ., Development. September 1, 2023; 150 (17):
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Towards the generation of gnotobiotic larvae as a tool to investigate the influence of the microbiome on the development of the amphibian immune system., Miller AJ, Gass J, Jo MC, Bishop L, Petereit J, Woodhams DC, Voyles J., Philos Trans R Soc Lond B Biol Sci. July 31, 2023; 378 (1882): 20220125.
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Pleiotropy of autism-associated chromatin regulators., Lasser M, Sun N, Xu Y, Wang S, Drake S, Law K, Gonzalez S, Wang B, Drury V, Castillo O, Zaltsman Y, Dea J, Bader E, McCluskey KE, State MW, Willsey AJ, Willsey HR., Development. July 15, 2023; 150 (14):
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Two conserved vocal central pattern generators broadly tuned for fast and slow rates generate species-specific vocalizations in Xenopus clawed frogs., Yamaguchi A, Peltier M., Elife. May 15, 2023; 12
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Polyploidy in Xenopus lowers metabolic rate by decreasing total cell surface area., Cadart C, Bartz J, Oaks G, Liu MZ, Heald R., Curr Biol. May 8, 2023; 33 (9): 1744-1752.e7.
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DEAD box RNA helicases act as nucleotide exchange factors for casein kinase 2., Fatti E, Hirth A, Švorinić A, Günther M, Stier G, Cruciat CM, Acebrón SP, Papageorgiou D, Sinning I, Krijgsveld J, Höfer T, Niehrs C., Sci Signal. April 25, 2023; 16 (782): eabp8923.
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Mitotic chromosomes scale to nuclear-cytoplasmic ratio and cell size in Xenopus., Zhou CY, Dekker B, Liu Z, Cabrera H, Ryan J, Dekker J, Heald R., Elife. April 25, 2023; 12
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Dodecaploid Xenopus longipes provides insight into the emergence of size scaling relationships during development., Miller KE, Cadart C, Heald R., Curr Biol. April 10, 2023; 33 (7): 1327-1336.e4.
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Histone deacetylase 1 maintains lineage integrity through histone acetylome refinement during early embryogenesis., Zhou JJ, Cho JS, Han H, Blitz IL, Wang W, Cho KWY., Elife. March 27, 2023; 12
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Monitoring the compaction of single DNA molecules in Xenopus egg extract in real time., Sun M, Amiri H, Tong AB, Shintomi K, Hirano T, Bustamante C, Heald R., Proc Natl Acad Sci U S A. March 21, 2023; 120 (12): e2221309120.
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DNA methylation clocks for clawed frogs reveal evolutionary conservation of epigenetic aging., Zoller JA, Parasyraki E, Lu AT, Haghani A, Niehrs C, Horvath S., Geroscience. February 4, 2023; 46 (1): 945-960.
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Albino Xenopus laevis tadpoles prefer dark environments compared to wild type., Adebogun GT, Bachmann AE, Callan AA, Khan U, Lewis AR, Pollock AC, Alfonso SA, Arango Sumano D, Bhatt DA, Cullen AB, Hajian CM, Huang W, Jaeger EL, Li E, Maske AK, Offenberg EG, Ta V, Whiting WW, McKinney JE, Butler J, O'Connell LA., MicroPubl Biol. January 1, 2023; 2023
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A circadian-dependent preference for light displayed by Xenopus tadpoles is modulated by serotonin., Bruno JR, Udoh UG, Landen JG, Osborn PO, Asher CJ, Hunt JE, Pratt KG., iScience. November 18, 2022; 25 (11): 105375.
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In vivo high-content imaging and regression analysis reveal non-cell autonomous functions of Shroom3 during neural tube closure., Baldwin AT, Kim JH, Wallingford JB., Dev Biol. November 13, 2022; 491 105-112.
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Kap-β2/Transportin mediates β-catenin nuclear transport in Wnt signaling., Hwang WY, Kostiuk V, González DP, Lusk CP, Khokha MK., Elife. October 27, 2022; 11
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Best Practices for Xenopus tropicalis Husbandry., Nakayama T, Grainger RM., Cold Spring Harb Protoc. October 25, 2022;
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Nascent transcriptome reveals orchestration of zygotic genome activation in early embryogenesis., Chen H, Good MC., Curr Biol. October 10, 2022; 32 (19): 4314-4324.e7.
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Electrophysiological responses to conspecific odorants in Xenopus laevis show potential for chemical signaling., Rhodes HJ, Amo M., PLoS One. September 7, 2022; 17 (9): e0273035.
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The homeodomain transcription factor Ventx2 regulates respiratory progenitor cell number and differentiation timing during Xenopus lung development., Rankin SA, Zorn AM., Dev Growth Differ. September 1, 2022; 64 (7): 347-361.
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Molecular conflicts disrupting centromere maintenance contribute to Xenopus hybrid inviability., Kitaoka M, Smith OK, Straight AF, Heald R., Curr Biol. August 26, 2022; 32 (18): 3939-3951.e6.
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Molecular dissection of condensin II-mediated chromosome assembly using in vitro assays., Yoshida MM, Kinoshita K, Aizawa Y, Tane S, Yamashita D, Shintomi K, Hirano T., Elife. August 19, 2022; 11
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Engagement of Foxh1 in chromatin regulation revealed by protein interactome analyses., Zhou JJ, Pham PD, Han H, Wang W, Cho KWY., Dev Growth Differ. August 1, 2022; 64 (6): 297-305.
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Component analysis of nucleolar protein compartments using Xenopus laevis oocytes., Lavering ED, Petros IN, Weeks DL., Dev Growth Differ. August 1, 2022; 64 (6): 306-317.
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Identification and validation of candidate risk genes in endocytic vesicular trafficking associated with esophageal atresia and tracheoesophageal fistulas., Zhong G, Ahimaz P, Edwards NA, Hagen JJ, Faure C, Lu Q, Kingma P, Middlesworth W, Khlevner J, El Fiky M, Schindel D, Fialkowski E, Kashyap A, Forlenza S, Kenny AP, Zorn AM, Shen Y, Chung WK., HGG Adv. July 14, 2022; 3 (3): 100107.
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Global analysis of cell behavior and protein dynamics reveals region-specific roles for Shroom3 and N-cadherin during neural tube closure., Baldwin AT, Kim JH, Seo H, Wallingford JB., Elife. March 4, 2022; 11
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Tissue-Targeted CRISPR-Cas9-Mediated Genome Editing of Multiple Homeologs in F0-Generation Xenopus laevis Embryos., Corkins ME, DeLay BD, Miller RK., Cold Spring Harb Protoc. March 1, 2022; 2022 (3):
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Topographic map formation and the effects of NMDA receptor blockade in the developing visual system., Li VJ, Schohl A, Ruthazer ES., Proc Natl Acad Sci U S A. February 22, 2022; 119 (8):
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Uncoupling the BMP receptor antagonist function from the WNT agonist function of R-spondin 2 using the inhibitory peptide dendrimer RWd., Lee H, Sun R, Niehrs C., J Biol Chem. February 1, 2022; 298 (2): 101586.
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Proteomic screen reveals diverse protein transport between connected neurons in the visual system., Schiapparelli LM, Sharma P, He HY, Li J, Shah SH, McClatchy DB, Ma Y, Liu HH, Goldberg JL, Yates JR, Cline HT., Cell Rep. January 25, 2022; 38 (4): 110287.
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Patterns of tubb2b Promoter-Driven Fluorescence in the Forebrain of Larval Xenopus laevis., Daume D, Offner T, Hassenklöver T, Manzini I., Front Neuroanat. January 1, 2022; 16 914281.
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L-bodies are RNA-protein condensates driving RNA localization in Xenopus oocytes., Neil CR, Jeschonek SP, Cabral SE, O'Connell LC, Powrie EA, Otis JP, Wood TR, Mowry KL., Mol Biol Cell. December 1, 2021; 32 (22): ar37.
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Ion permeation controlled by hydrophobic residues and proton binding in the proton-activated chloride channel., Cai R, Tang J, Chen XZ., iScience. November 1, 2021; 24 (12): 103395.
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Imaging of dynamic actin remodeling reveals distinct behaviors of head and trunk mesoderm in gastrulating Xenopus laevis., Komatsu V, Doddihal V, Chang C., MicroPubl Biol. October 14, 2021; 2021
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Tbx5 drives Aldh1a2 expression to regulate a RA-Hedgehog-Wnt gene regulatory network coordinating cardiopulmonary development., Rankin SA, Steimle JD, Yang XH, Rydeen AB, Agarwal K, Chaturvedi P, Ikegami K, Herriges MJ, Moskowitz IP, Zorn AM., Elife. October 13, 2021; 10
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The DNA-to-cytoplasm ratio broadly activates zygotic gene expression in Xenopus., Jukam D, Kapoor RR, Straight AF, Skotheim JM., Curr Biol. October 11, 2021; 31 (19): 4269-4281.e8.
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Foxm1 regulates neural progenitor fate during spinal cord regeneration., Pelzer D, Phipps LS, Thuret R, Gallardo-Dodd CJ, Baker SM, Dorey K., EMBO Rep. September 6, 2021; 22 (9): e50932.
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Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS., Kakebeen AD, Chitsazan AD, Wills AE., Dev Dyn. September 1, 2021; 250 (9): 1381-1392.
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Sobp modulates the transcriptional activation of Six1 target genes and is required during craniofacial development., Tavares ALP, Jourdeuil K, Neilson KM, Majumdar HD, Moody SA., Development. September 1, 2021; 148 (17):
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A convergent molecular network underlying autism and congenital heart disease., Rosenthal SB, Willsey HR, Xu Y, Mei Y, Dea J, Wang S, Curtis C, Sempou E, Khokha MK, Chi NC, Willsey AJ, Fisch KM, Ideker T., Cell Syst. August 17, 2021; 12 (11): 1094-1107.e6.
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Tubulin acetylation promotes penetrative capacity of cells undergoing radial intercalation., Collins C, Kim SK, Ventrella R, Carruzzo HM, Wortman JC, Han H, Suva EE, Mitchell JW, Yu CC, Mitchell BJ., Cell Rep. August 17, 2021; 36 (7): 109556.
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Xenopus, a Model to Study Wound Healing and Regeneration: Experimental Approaches., Slater PG, Palacios M, Larraín J., Cold Spring Harb Protoc. August 2, 2021; 2021 (8):
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Twinfilin1 controls lamellipodial protrusive activity and actin turnover during vertebrate gastrulation., Devitt CC, Lee C, Cox RM, Papoulas O, Alvarado J, Shekhar S, Marcotte EM, Wallingford JB., J Cell Sci. July 15, 2021; 134 (14):
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The Wnt/PCP formin Daam1 drives cell-cell adhesion during nephron development., Krneta-Stankic V, Corkins ME, Paulucci-Holthauzen A, Kloc M, Gladden AB, Miller RK., Cell Rep. July 6, 2021; 36 (1): 109340.
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Axon terminals control endolysosome diffusion to support synaptic remodelling., Terni B, Llobet A., Life Sci Alliance. July 5, 2021; 4 (8):
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DLG5 variants are associated with multiple congenital anomalies including ciliopathy phenotypes., Marquez J, Mann N, Arana K, Deniz E, Ji W, Konstantino M, Mis EK, Deshpande C, Jeffries L, McGlynn J, Hugo H, Widmeier E, Konrad M, Tasic V, Morotti R, Baptista J, Ellard S, Lakhani SA, Hildebrandt F, Khokha MK., J Med Genet. July 1, 2021; 58 (7): 453-464.
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Rspo2 inhibits TCF3 phosphorylation to antagonize Wnt signaling during vertebrate anteroposterior axis specification., Reis AH, Sokol SY., Sci Rep. June 28, 2021; 11 (1): 13433.
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Altering metabolite distribution at Xenopus cleavage stages affects left-right gene expression asymmetries., Onjiko RM, Nemes P, Moody SA., Genesis. June 1, 2021; 59 (5-6): e23418.
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The Scf/Kit pathway implements self-organized epithelial patterning., Chuyen A, Rulquin C, Daian F, Thomé V, Clément R, Kodjabachian L, Pasini A., Dev Cell. March 22, 2021; 56 (6): 795-810.e7.
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Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience., Willsey HR, Exner CRT, Xu Y, Everitt A, Sun N, Wang B, Dea J, Schmunk G, Zaltsman Y, Teerikorpi N, Kim A, Anderson AS, Shin D, Seyler M, Nowakowski TJ, Harland RM, Willsey AJ, State MW., Neuron. March 3, 2021; 109 (5): 788-804.e8.
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A role for Cep70 in centriole amplification in multiciliated cells., Kim SK, Brotslaw E, Thome V, Mitchell J, Ventrella R, Collins C, Mitchell B., Dev Biol. March 1, 2021; 471 10-17.
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Retinoic acid production, regulation and containment through Zic1, Pitx2c and Cyp26c1 control cranial placode specification., Dubey A, Yu J, Liu T, Kane MA, Saint-Jeannet JP., Development. February 16, 2021; 148 (4):
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Rab11fip5 regulates telencephalon development via ephrinB1 recycling., Yoon J, Garo J, Lee M, Sun J, Hwang YS, Daar IO., Development. February 2, 2021; 148 (3):
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Understanding cornea epithelial stem cells and stem cell deficiency: Lessons learned using vertebrate model systems., Adil MT, Henry JJ., Genesis. February 1, 2021; 59 (1-2): e23411.
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Xenopus epidermal and endodermal epithelia as models for mucociliary epithelial evolution, disease, and metaplasia., Walentek P., Genesis. February 1, 2021; 59 (1-2): e23406.
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Affinity Purification of Label-free Tubulins from Xenopus Egg Extracts., Reusch S, Biswas A, Hirst WG, Reber S., STAR Protoc. December 18, 2020; 1 (3): 100151.
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Whole-Brain Calcium Imaging in Larval Xenopus., Offner T, Daume D, Weiss L, Hassenklöver T, Manzini I., Cold Spring Harb Protoc. December 1, 2020; 2020 (12):
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R-spondins are BMP receptor antagonists in Xenopus early embryonic development., Lee H, Seidl C, Sun R, Glinka A, Niehrs C., Nat Commun. November 4, 2020; 11 (1): 5570.
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Comparative gene expression profiling between optic nerve and spinal cord injury in Xenopus laevis reveals a core set of genes inherent in successful regeneration of vertebrate central nervous system axons., Belrose JL, Prasad A, Sammons MA, Gibbs KM, Szaro BG., BMC Genomics. August 5, 2020; 21 (1): 540.
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The neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and control of brain size in Xenopus embryos., Willsey HR, Xu Y, Everitt A, Dea J, Exner CRT, Willsey AJ, State MW, Harland RM., Development. June 22, 2020; 147 (21):
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Differences in Intrinsic Tubulin Dynamic Properties Contribute to Spindle Length Control in Xenopus Species., Hirst WG, Biswas A, Mahalingan KK, Reber S., Curr Biol. June 8, 2020; 30 (11): 2184-2190.e5.
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Simple embryo injection of long single-stranded donor templates with the CRISPR/Cas9 system leads to homology-directed repair in Xenopus tropicalis and Xenopus laevis., Nakayama T, Grainger RM, Cha SW., Genesis. June 1, 2020; 58 (6): e23366.
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Centriole Number and the Accumulation of Microtubules Modulate the Timing of Apical Insertion during Radial Intercalation., Collins C, Majekodunmi A, Mitchell B., Curr Biol. May 18, 2020; 30 (10): 1958-1964.e3.
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Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors., Kakebeen AD, Chitsazan AD, Williams MC, Saunders LM, Wills AE., Elife. April 27, 2020; 9
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Model systems for regeneration: Xenopus., Phipps LS, Marshall L, Dorey K, Amaya E., Development. March 19, 2020; 147 (6):
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An in vivo brain-bacteria interface: the developing brain as a key regulator of innate immunity., Herrera-Rincon C, Paré JF, Martyniuk CJ, Jannetty SK, Harrison C, Fischer A, Dinis A, Keshari V, Novak R, Levin M., NPJ Regen Med. February 4, 2020; 5 2.
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Disrupted ER membrane protein complex-mediated topogenesis drives congenital neural crest defects., Marquez J, Criscione J, Charney RM, Prasad MS, Hwang WY, Mis EK, García-Castro MI, Khokha MK., J Clin Invest. February 3, 2020; 130 (2): 813-826.
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Real-time physiological measurements of oxygen using a non-invasive self-referencing optical fiber microsensor., Ferreira F, Luxardi G, Reid B, Ma L, Raghunathan V, Zhao M., Nat Protoc. February 1, 2020; 15 (2): 207-235.
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The tumor suppressor PTPRK promotes ZNRF3 internalization and is required for Wnt inhibition in the Spemann organizer., Chang LS, Kim M, Glinka A, Reinhard C, Niehrs C., Elife. January 14, 2020; 9
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Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database., Fortriede JD, Pells TJ, Chu S, Chaturvedi P, Wang D, Fisher ME, James-Zorn C, Wang Y, Nenni MJ, Burns KA, Lotay VS, Ponferrada VG, Karimi K, Zorn AM, Vize PD., Nucleic Acids Res. January 8, 2020; 48 (D1): D776-D782.
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Simple Method To Characterize the Ciliary Proteome of Multiciliated Cells., Sim HJ, Yun S, Kim HE, Kwon KY, Kim GH, Yun S, Kim BG, Myung K, Park TJ, Kwon T., J Proteome Res. January 3, 2020; 19 (1): 391-400.
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Imaging nascent transcription in wholemount vertebrate embryos to characterize zygotic genome activation., Chen H, Good MC., Methods Enzymol. January 1, 2020; 638 139-165.
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Endosome-Mediated Epithelial Remodeling Downstream of Hedgehog-Gli Is Required for Tracheoesophageal Separation., Nasr T, Mancini P, Rankin SA, Edwards NA, Agricola ZN, Kenny AP, Kinney JL, Daniels K, Vardanyan J, Han L, Trisno SL, Cha SW, Wells JM, Kofron MJ, Zorn AM., Dev Cell. December 16, 2019; 51 (6): 665-674.e6.
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ΔN-Tp63 Mediates Wnt/β-Catenin-Induced Inhibition of Differentiation in Basal Stem Cells of Mucociliary Epithelia., Haas M, Gómez Vázquez JL, Sun DI, Tran HT, Brislinger M, Tasca A, Shomroni O, Vleminckx K, Walentek P., Cell Rep. September 24, 2019; 28 (13): 3338-3352.e6.
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Xenopus: Driving the Discovery of Novel Genes in Patient Disease and Their Underlying Pathological Mechanisms Relevant for Organogenesis., Hwang WY, Marquez J, Khokha MK., Front Physiol. July 30, 2019; 10 953.
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Spatiotemporal Patterning of Zygotic Genome Activation in a Model Vertebrate Embryo., Chen H, Einstein LC, Little SC, Good MC., Dev Cell. June 17, 2019; 49 (6): 852-866.e7.
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Visualizing flow in an intact CSF network using optical coherence tomography: implications for human congenital hydrocephalus., Date P, Ackermann P, Furey C, Fink IB, Jonas S, Khokha MK, Kahle KT, Deniz E., Sci Rep. April 17, 2019; 9 (1): 6196.
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Rho Flares Repair Local Tight Junction Leaks., Stephenson RE, Higashi T, Erofeev IS, Arnold TR, Leda M, Goryachev AB, Miller AL., Dev Cell. February 25, 2019; 48 (4): 445-459.e5.
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Six1 and Irx1 have reciprocal interactions during cranial placode and otic vesicle formation., Sullivan CH, Majumdar HD, Neilson KM, Moody SA., Dev Biol. February 1, 2019; 446 (1): 68-79.
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Rapid changes in tissue mechanics regulate cell behaviour in the developing embryonic brain., Thompson AJ, Pillai EK, Dimov IB, Foster SK, Holt CE, Franze K., Elife. January 15, 2019; 8
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The voltage sensing phosphatase (VSP) localizes to the apical membrane of kidney tubule epithelial cells., Ratzan W, Rayaprolu V, Killian SE, Bradley R, Kohout SC., PLoS One. January 1, 2019; 14 (4): e0209056.
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A YWHAZ Variant Associated With Cardiofaciocutaneous Syndrome Activates the RAF-ERK Pathway., Popov IK, Hiatt SM, Whalen S, Keren B, Ruivenkamp C, van Haeringen A, Chen MJ, Cooper GM, Korf BR, Chang C., Front Physiol. January 1, 2019; 10 388.
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The Many Faces of Xenopus: Xenopus laevis as a Model System to Study Wolf-Hirschhorn Syndrome., Lasser M, Pratt B, Monahan C, Kim SW, Lowery LA., Front Physiol. January 1, 2019; 10 817.
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Quantitative Phenotyping of Xenopus Embryonic Heart Pathophysiology Using Hemoglobin Contrast Subtraction Angiography to Screen Human Cardiomyopathies., Deniz E, Jonas S, Khokha MK, Choma MA., Front Physiol. January 1, 2019; 10 1197.
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Functional Evaluation of Olfactory Pathways in Living Xenopus Tadpoles., Terni B, Pacciolla P, Perelló M, Llobet A., J Vis Exp. December 11, 2018; (142):
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Characterization of Pax3 and Sox10 transgenic Xenopus laevis embryos as tools to study neural crest development., Alkobtawi M, Ray H, Barriga EH, Moreno M, Kerney R, Monsoro-Burq AH, Saint-Jeannet JP, Mayor R., Dev Biol. December 1, 2018; 444 Suppl 1 S202-S208.
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Early redox activities modulate Xenopus tail regeneration., Ferreira F, Raghunathan V, Luxardi G, Zhu K, Zhao M., Nat Commun. October 16, 2018; 9 (1): 4296.
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The Xenopus tadpole: An in vivo model to screen drugs favoring remyelination., Mannioui A, Vauzanges Q, Fini JB, Henriet E, Sekizar S, Azoyan L, Thomas JL, Pasquier DD, Giovannangeli C, Demeneix B, Lubetzki C, Zalc B., Mult Scler. October 1, 2018; 24 (11): 1421-1432.
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Extreme nuclear branching in healthy epidermal cells of the Xenopus tail fin., Arbach HE, Harland-Dunaway M, Chang JK, Wills AE., J Cell Sci. September 20, 2018; 131 (18):
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Melanocortin Receptor 4 Signaling Regulates Vertebrate Limb Regeneration., Zhang M, Chen Y, Xu H, Yang L, Yuan F, Li L, Xu Y, Chen Y, Zhang C, Lin G., Dev Cell. August 20, 2018; 46 (4): 397-409.e5.
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Histone deacetylase activity has an essential role in establishing and maintaining the vertebrate neural crest., Rao A, LaBonne C., Development. August 8, 2018; 145 (15):
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The Psychiatric Cell Map Initiative: A Convergent Systems Biological Approach to Illuminating Key Molecular Pathways in Neuropsychiatric Disorders., Willsey AJ, Morris MT, Wang S, Willsey HR, Sun N, Teerikorpi N, Baum TB, Cagney G, Bender KJ, Desai TA, Srivastava D, Davis GW, Doudna J, Chang E, Sohal V, Lowenstein DH, Li H, Agard D, Keiser MJ, Shoichet B, von Zastrow M, Mucke L, Finkbeiner S, Gan L, Sestan N, Ward ME, Huttenhain R, Nowakowski TJ, Bellen HJ, Frank LM, Khokha MK, Lifton RP, Kampmann M, Ideker T, State MW, Krogan NJ., Cell. July 26, 2018; 174 (3): 505-520.
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Dual roles for ATP in the regulation of phase separated protein aggregates in Xenopus oocyte nucleoli., Hayes MH, Peuchen EH, Dovichi NJ, Weeks DL., Elife. July 17, 2018; 7
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Assembly of Spindles and Asters in Xenopus Egg Extracts., Field CM, Mitchison TJ., Cold Spring Harb Protoc. June 1, 2018; 2018 (6):
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Embryonic regeneration by relocalization of the Spemann organizer during twinning in Xenopus., Moriyama Y, De Robertis EM., Proc Natl Acad Sci U S A. May 22, 2018; 115 (21): E4815-E4822.
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Genome-wide transcriptomics analysis identifies sox7 and sox18 as specifically regulated by gata4 in cardiomyogenesis., Afouda BA, Lynch AT, de Paiva Alves E, Hoppler S., Dev Biol. February 1, 2018; 434 (1): 108-120.
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Primordial Germ Cell Transplantation for CRISPR/Cas9-based Leapfrogging in Xenopus., Blitz IL., J Vis Exp. February 1, 2018; (132):
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Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus., Gibeaux R, Acker R, Kitaoka M, Georgiou G, van Kruijsbergen I, Ford B, Marcotte EM, Nomura DK, Kwon T, Veenstra GJC, Heald R., Nature. January 18, 2018; 553 (7688): 337-341.
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In Vivo Analysis of the Neurovascular Niche in the Developing Xenopus Brain., Lau M, Li J, Cline HT., eNeuro. July 31, 2017; 4 (4):
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Distinct cis-acting regions control six6 expression during eye field and optic cup stages of eye formation., Ledford KL, Martinez-De Luna RI, Theisen MA, Rawlins KD, Viczian AS, Zuber ME., Dev Biol. June 15, 2017; 426 (2): 418-428.
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Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing., Popov IK, Kwon T, Crossman DK, Crowley MR, Wallingford JB, Chang C., Dev Biol. June 15, 2017; 426 (2): 429-441.
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Spatiotemporally Controlled Mechanical Cues Drive Progenitor Mesenchymal-to-Epithelial Transition Enabling Proper Heart Formation and Function., Jackson TR, Kim HY, Balakrishnan UL, Stuckenholz C, Davidson LA., Curr Biol. May 8, 2017; 27 (9): 1326-1335.
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Foxh1 Occupies cis-Regulatory Modules Prior to Dynamic Transcription Factor Interactions Controlling the Mesendoderm Gene Program., Charney RM, Forouzmand E, Cho JS, Cheung J, Paraiso KD, Yasuoka Y, Takahashi S, Taira M, Blitz IL, Xie X, Cho KW., Dev Cell. March 27, 2017; 40 (6): 595-607.e4.
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Evolution of vocal patterns: tuning hindbrain circuits during species divergence., Barkan CL, Zornik E, Kelley DB., J Exp Biol. March 1, 2017; 220 (Pt 5): 856-867.
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Subfunctionalization of Paralogous Aryl Hydrocarbon Receptors from the Frog Xenopus Laevis: Distinct Target Genes and Differential Responses to Specific Agonists in a Single Cell Type., Freeburg SH, Engelbrecht E, Powell WH., Toxicol Sci. February 1, 2017; 155 (2): 337-347.
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Xenopus extract approaches to studying microtubule organization and signaling in cytokinesis., Field CM, Pelletier JF, Mitchison TJ., Methods Cell Biol. January 1, 2017; 137 395-435.
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Probing forebrain to hindbrain circuit functions in Xenopus., Kelley DB, Elliott TM, Evans BJ, Hall IC, Leininger EC, Rhodes HJ, Yamaguchi A, Zornik E., Genesis. January 1, 2017; 55 (1-2):
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Ciliary transcription factors and miRNAs precisely regulate Cp110 levels required for ciliary adhesions and ciliogenesis., Walentek P, Quigley IK, Sun DI, Sajjan UK, Kintner C, Harland RM., Elife. September 13, 2016; 5
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Fragile X Mental Retardation Protein Is Required to Maintain Visual Conditioning-Induced Behavioral Plasticity by Limiting Local Protein Synthesis., Liu HH, Cline HT., J Neurosci. July 6, 2016; 36 (27): 7325-39.
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Xenopus pax6 mutants affect eye development and other organ systems, and have phenotypic similarities to human aniridia patients., Nakayama T, Fisher M, Nakajima K, Odeleye AO, Zimmerman KB, Fish MB, Yaoita Y, Chojnowski JL, Lauderdale JD, Netland PA, Grainger RM., Dev Biol. December 15, 2015; 408 (2): 328-44.
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RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM(®) genes for hereditary disorders of hearing and balance., Ramírez-Gordillo D, Powers TR, van Velkinburgh JC, Trujillo-Provencio C, Schilkey F, Serrano EE., BMC Res Notes. November 18, 2015; 8 691.
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The Nuclear Proteome of a Vertebrate., Wühr M, Güttler T, Peshkin L, McAlister GC, Sonnett M, Ishihara K, Groen AC, Presler M, Erickson BK, Mitchison TJ, Kirschner MW, Gygi SP., Curr Biol. October 19, 2015; 25 (20): 2663-71.
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Spindle-to-cortex communication in cleaving, polyspermic Xenopus eggs., Field CM, Groen AC, Nguyen PA, Mitchison TJ., Mol Biol Cell. October 15, 2015; 26 (20): 3628-40.
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Using supported bilayers to study the spatiotemporal organization of membrane-bound proteins., Nguyen PA, Field CM, Groen AC, Mitchison TJ, Loose M., Methods Cell Biol. January 1, 2015; 128 223-241.
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TACC3 is a microtubule plus end-tracking protein that promotes axon elongation and also regulates microtubule plus end dynamics in multiple embryonic cell types., Nwagbara BU, Faris AE, Bearce EA, Erdogan B, Ebbert PT, Evans MF, Rutherford EL, Enzenbacher TB, Lowery LA., Mol Biol Cell. November 1, 2014; 25 (21): 3350-62.
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Spatial organization of cytokinesis signaling reconstituted in a cell-free system., Nguyen PA, Groen AC, Loose M, Ishihara K, Wühr M, Field CM, Mitchison TJ., Science. October 10, 2014; 346 (6206): 244-7.
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The splicing factor PQBP1 regulates mesodermal and neural development through FGF signaling., Iwasaki Y, Thomsen GH., Development. October 1, 2014; 141 (19): 3740-51.
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Chromatin immunoprecipitation and deep sequencing in Xenopus tropicalis and Xenopus laevis., Wills AE, Gupta R, Chuong E, Baker JC., Methods. April 1, 2014; 66 (3): 410-21.
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