XB-ART-52538
PLoS Biol
2016 Mar 04;143:e1002393. doi: 10.1371/journal.pbio.1002393.
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Signal Transduction at the Domain Interface of Prokaryotic Pentameric Ligand-Gated Ion Channels.
Bertozzi C, Zimmermann I, Engeler S, Hilf RJ, Dutzler R.
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Pentameric ligand-gated ion channels are activated by the binding of agonists to a site distant from the ion conduction path. These membrane proteins consist of distinct ligand-binding and pore domains that interact via an extended interface. Here, we have investigated the role of residues at this interface for channel activation to define critical interactions that couple conformational changes between the two structural units. By characterizing point mutants of the prokaryotic channels ELIC and GLIC by electrophysiology, X-ray crystallography and isothermal titration calorimetry, we have identified conserved residues that, upon mutation, apparently prevent activation but not ligand binding. The positions of nonactivating mutants cluster at a loop within the extracellular domain connecting β-strands 6 and 7 and at a loop joining the pore-forming helix M2 with M3 where they contribute to a densely packed core of the protein. An ionic interaction in the extracellular domain between the turn connecting β-strands 1 and 2 and a residue at the end of β-strand 10 stabilizes a state of the receptor with high affinity for agonists, whereas contacts of this turn to a conserved proline residue in the M2-M3 loop appear to be less important than previously anticipated. When mapping residues with strong functional phenotype on different channel structures, mutual distances are closer in conducting than in nonconducting conformations, consistent with a potential role of contacts in the stabilization of the open state. Our study has revealed a pattern of interactions that are crucial for the relay of conformational changes from the extracellular domain to the pore region of prokaryotic pentameric ligand-gated ion channels. Due to the strong conservation of the interface, these results are relevant for the entire family.
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Species referenced: Xenopus laevis
Genes referenced: gabarap
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References [+] :
,
Correction: Signal Transduction at the Domain Interface of Prokaryotic Pentameric Ligand-Gated Ion Channels.
2016, Pubmed
, Correction: Signal Transduction at the Domain Interface of Prokaryotic Pentameric Ligand-Gated Ion Channels. 2016, Pubmed
Absalom, Role of charged residues in coupling ligand binding and channel activation in the extracellular domain of the glycine receptor. 2003, Pubmed
Adams, PHENIX: building new software for automated crystallographic structure determination. 2002, Pubmed
Althoff, X-ray structures of GluCl in apo states reveal a gating mechanism of Cys-loop receptors. 2014, Pubmed
Auerbach, Thinking in cycles: MWC is a good model for acetylcholine receptor-channels. 2012, Pubmed
Bafna, Gating at the mouth of the acetylcholine receptor channel: energetic consequences of mutations in the alphaM2-cap. 2008, Pubmed
Bartos, Structural basis of activation of cys-loop receptors: the extracellular-transmembrane interface as a coupling region. 2009, Pubmed
Bocquet, A prokaryotic proton-gated ion channel from the nicotinic acetylcholine receptor family. 2007, Pubmed , Xenbase
Bocquet, X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation. 2009, Pubmed
Bondarenko, NMR structure of the transmembrane domain of the n-acetylcholine receptor beta2 subunit. 2010, Pubmed
Bouzat, The interface between extracellular and transmembrane domains of homomeric Cys-loop receptors governs open-channel lifetime and rate of desensitization. 2008, Pubmed
Bouzat, Coupling of agonist binding to channel gating in an ACh-binding protein linked to an ion channel. 2004, Pubmed
Campos-Caro, A single residue in the M2-M3 loop is a major determinant of coupling between binding and gating in neuronal nicotinic receptors. 1996, Pubmed , Xenbase
Chakrapani, Gating dynamics of the acetylcholine receptor extracellular domain. 2004, Pubmed
Collaborative Computational Project, Number 4, The CCP4 suite: programs for protein crystallography. 1994, Pubmed
daCosta, Gating of pentameric ligand-gated ion channels: structural insights and ambiguities. 2013, Pubmed
Dellisanti, Site-directed spin labeling reveals pentameric ligand-gated ion channel gating motions. 2013, Pubmed , Xenbase
Dellisanti, Crystal structure of the extracellular domain of nAChR alpha1 bound to alpha-bungarotoxin at 1.94 A resolution. 2007, Pubmed
Du, Glycine receptor mechanism elucidated by electron cryo-microscopy. 2015, Pubmed
Edelstein, Allosteric transitions of the acetylcholine receptor. 1998, Pubmed
Emsley, Features and development of Coot. 2010, Pubmed
Geertsma, A versatile and efficient high-throughput cloning tool for structural biology. 2011, Pubmed
Gonzalez-Gutierrez, Gating of the proton-gated ion channel from Gloeobacter violaceus at pH 4 as revealed by X-ray crystallography. 2013, Pubmed
Gonzalez-Gutierrez, Mutations that stabilize the open state of the Erwinia chrisanthemi ligand-gated ion channel fail to change the conformation of the pore domain in crystals. 2012, Pubmed , Xenbase
Groot-Kormelink, Achieving optimal expression for single channel recording: a plasmid ratio approach to the expression of alpha 1 glycine receptors in HEK293 cells. 2002, Pubmed
Grosman, The extracellular linker of muscle acetylcholine receptor channels is a gating control element. 2000, Pubmed
Grutter, Molecular tuning of fast gating in pentameric ligand-gated ion channels. 2005, Pubmed
Hassaine, X-ray structure of the mouse serotonin 5-HT3 receptor. 2014, Pubmed
Hibbs, Principles of activation and permeation in an anion-selective Cys-loop receptor. 2011, Pubmed
Hilf, Structure of a potentially open state of a proton-activated pentameric ligand-gated ion channel. 2009, Pubmed
Hilf, Structural basis of open channel block in a prokaryotic pentameric ligand-gated ion channel. 2010, Pubmed , Xenbase
Hilf, A prokaryotic perspective on pentameric ligand-gated ion channel structure. 2009, Pubmed
Hilf, X-ray structure of a prokaryotic pentameric ligand-gated ion channel. 2008, Pubmed
Huang, Crystal structure of human glycine receptor-α3 bound to antagonist strychnine. 2015, Pubmed
Jha, Acetylcholine receptor gating at extracellular transmembrane domain interface: the cys-loop and M2-M3 linker. 2007, Pubmed
Karlin, On the application of "a plausible model" of allosteric proteins to the receptor for acetylcholine. 1967, Pubmed
Kash, Coupling of agonist binding to channel gating in the GABA(A) receptor. 2003, Pubmed
Keller, High-precision isothermal titration calorimetry with automated peak-shape analysis. 2012, Pubmed
Laha, Macroscopic kinetics of pentameric ligand gated ion channels: comparisons between two prokaryotic channels and one eukaryotic channel. 2013, Pubmed , Xenbase
Lee, Binding to gating transduction in nicotinic receptors: Cys-loop energetically couples to pre-M1 and M2-M3 regions. 2009, Pubmed
Lee, Principal pathway coupling agonist binding to channel gating in nicotinic receptors. 2005, Pubmed
Lester, Cys-loop receptors: new twists and turns. 2004, Pubmed
Lewis, Properties of human glycine receptors containing the hyperekplexia mutation alpha1(K276E), expressed in Xenopus oocytes. 1998, Pubmed , Xenbase
Lorenz, Heteromultimeric CLC chloride channels with novel properties. 1996, Pubmed , Xenbase
Lynch, Identification of intracellular and extracellular domains mediating signal transduction in the inhibitory glycine receptor chloride channel. 1997, Pubmed
Marabelli, Mechanism of activation of the prokaryotic channel ELIC by propylamine: a single-channel study. 2015, Pubmed
McCoy, Phaser crystallographic software. 2007, Pubmed
Miller, Crystal structure of a human GABAA receptor. 2014, Pubmed
Miyazawa, Structure and gating mechanism of the acetylcholine receptor pore. 2003, Pubmed
Nury, Crystal structure of the extracellular domain of a bacterial ligand-gated ion channel. 2010, Pubmed
Pan, Structure of the pentameric ligand-gated ion channel ELIC cocrystallized with its competitive antagonist acetylcholine. 2012, Pubmed
Prevost, A locally closed conformation of a bacterial pentameric proton-gated ion channel. 2012, Pubmed
Price, Transducing agonist binding to channel gating involves different interactions in 5-HT3 and GABAC receptors. 2007, Pubmed , Xenbase
Purohit, Functional anatomy of an allosteric protein. 2013, Pubmed
Purohit, Acetylcholine receptor gating at extracellular transmembrane domain interface: the "pre-M1" linker. 2007, Pubmed
Rienzo, Structural requirements in the transmembrane domain of GLIC revealed by incorporation of noncanonical histidine analogs. 2014, Pubmed , Xenbase
Sauguet, Crystal structures of a pentameric ligand-gated ion channel provide a mechanism for activation. 2014, Pubmed , Xenbase
Schofield, Alanine-scanning mutagenesis in the signature disulfide loop of the glycine receptor alpha 1 subunit: critical residues for activation and modulation. 2004, Pubmed
Shen, Mutation causing severe myasthenia reveals functional asymmetry of AChR signature cystine loops in agonist binding and gating. 2003, Pubmed
Sine, Recent advances in Cys-loop receptor structure and function. 2006, Pubmed
Sixma, Acetylcholine binding protein (AChBP): a secreted glial protein that provides a high-resolution model for the extracellular domain of pentameric ligand-gated ion channels. 2003, Pubmed
Smart, HOLE: a program for the analysis of the pore dimensions of ion channel structural models. 1996, Pubmed
Taly, Nicotinic receptors: allosteric transitions and therapeutic targets in the nervous system. 2009, Pubmed
Tasneem, Identification of the prokaryotic ligand-gated ion channels and their implications for the mechanisms and origins of animal Cys-loop ion channels. 2005, Pubmed
Unwin, Refined structure of the nicotinic acetylcholine receptor at 4A resolution. 2005, Pubmed
Velisetty, Structural basis for allosteric coupling at the membrane-protein interface in Gloeobacter violaceus ligand-gated ion channel (GLIC). 2014, Pubmed
Wang, Intramembrane proton binding site linked to activation of bacterial pentameric ion channel. 2012, Pubmed
Xiu, A unified view of the role of electrostatic interactions in modulating the gating of Cys loop receptors. 2005, Pubmed , Xenbase
Zerangue, A new ER trafficking signal regulates the subunit stoichiometry of plasma membrane K(ATP) channels. 1999, Pubmed , Xenbase
Zimmermann, Inhibition of the prokaryotic pentameric ligand-gated ion channel ELIC by divalent cations. 2012, Pubmed , Xenbase
Zimmermann, Ligand activation of the prokaryotic pentameric ligand-gated ion channel ELIC. 2011, Pubmed
